Notes

Preparing for the upcoming Meandre release, as part of the larger SEASR on, I have been exploring a bit the inner machinery of WordPress to create a simple plugin for the SEASR site that could render Meandre component and flow descriptions straight out of their RDF desciptors. Actually, it turned out to be a breeze. After being a heavy user of WordPress in several project for few years now, its extensibility keeps sparking new possibilities in my mind every time I look into any of its facets. Anyway, I am rambling. Back to the point. To hit the ground running, I started by creating a simple generic plugin that would replace a tag with parameters for something else. I looked into several freely available plugins, the one that got me going was a very simple one, the SlideShare plugin by Joost de Valk. ...

Yes, I am back. Almost 28 hours later than expected, but I am back to Urbana. The trip started with a very tiny little delay of 8 hours in Barcelona. Yes, COA121 was the flight to Newark. Yes, COA121 was the first leg toward Urbana. Yes, the plane had technical problems on the way to Barcelona and had to land at the Azores islands to get it “fixed”. Yes, we did not dare to ask. Yes, we were tired of waiting for a plane that seemed never to come; but you should have seen the faces of the passengers deplaning at Barcelona, exhausted is not a word descriptive enough. Yes, we all filled a complaint form asking for money back according to the European Union bill of right for air passengers. Yes, we know that it was a bit of wishful thinking and the lack of anything better to do while waiting. ...

A while a go I wrote about tools for managing your LaTeX bibliography. Despite the fact that the tools I described help managing your LaTeX bibliography collection, it still did not help much with managing the tons of PDFs files you end pilling up when doing research on a particular topic. BibDesk has now the ability to attach files to entries, Zotero with its ability to store snapshots is still the closest thing I have found so far. However, a friend just pointed me to Papers, a Mac tool—yes it is just available for Mac—for managing your digital library of papers. Very much like iTunes, it allows to streamline your search, reading, organizing, and writing—there is a very interesting webcast by the creators of the software. If you have a Mac, it is worthwhile to give it a spin. ...

Are you familiar with threading in Java and looking for a crash course in Python? If the answer is yes, I just found an article written by Peyton McCullough that may help you. The “Basic Threading in Python” article can take you from no clue to writing your threaded Python code in a few minutes. See the example below, extracted from his article, to see if that rings a bell :D ...

Walking the streets of Barcelona—oops didn’t I mention I am on vacation?—I run into a bookstore near las Ramblas. Meandering around the narrow stacks, I found the newly released Catalan translation of Amélie Nothomb’s “Jornal d’Hirondelle” (Diary de l’oreneta/Diary of the swallow). The first book I read from her was “Méthaphysique des tubes”, and she got me at the first line. I need to speed up with Ulam’s autobiography—extremely addictive—so I can move on to this one. ...