Notes

On June 2013, I roamed the streets of Girona at night. It started feeling as an ephemeral compulsive need, a needed that could be easily tamed. Its recurrent nature ruled otherwise. I just kept going out at night. I just kept snapping away. I just kept walking over the old cobblestones. I just could not shake the itch. The transmutation of the eye kept charming me back. On June 2013, I roamed the streets of Girona at night. [pe2-gallery album=“http://picasaweb.google.com/data/feed/base/user/101892163699515371535/albumid/5891687846951531553?alt=rss&hl=en_US&kind=photo” ] ...

It has been a while since the last face lift to this blog. No, I was not planning any major revamp, but a simple one. Since it was released, I had the little green ShareThis button hanging around. I just wanted to balance a bit the elements on the page. I decided to reposition the button on the top right of the excerpts and on the post themselves. While doing the repositioning I decided to simplify a bit its functionality and replace the button with something a bit lighter and still with purpose. After giving it a bit of a thought I replaced it with Google’s +1 button for publishers. It looks a little best balanced and it does not clutter the layout. You can find more information on how to add the +1 button to your site can be found at the +1 button page for webmasters. ...

If you used to check my Twitter stream in the center column at the bottom of my blog, you would have noticed I have just replaced it with my Google Buzz profile stream instead. Yes, you can still see the my Twitter activity, but you will also be able to (1) see aggregated content/activity coming from other sources in one place, (2) subscribe to the stream, and (3) comment on each of the entries. As, I said, a minor update to improve its functionality a bit more. ...

You may find the slide deck and the abstract for the presentation we delivered today at the “Data-Intensive Research: how should we improve our ability to use data” workshop in Edinburgh. Abstract This talk will focus a highly scalable data intensive infrastructure being developed at the National Center for Supercomputing Application (NCSA) at the University of Illinois and will introduce current research efforts to tackle the challenges presented by big-data. Research efforts include exploring potential ways of integration between cloud computing concepts—such as Hadoop or Meandre—and traditional HPC technologies and assets. These architecture models contrast significantly, but can be leveraged by building cloud conduits that connect these resources to provide even greater flexibility and scalability on demand. Orchestrating the physical computational environment requires innovative and sophisticated software infrastructure that can transparently take advantage of the functional features and to negotiate the constraints imposed by this diversity of computational resources. Research conducted during the development of the Meandre infrastructure has lead to the production of an agile conductor able to leverage the particular advantages in the physical diversity. It can also be implemented as services and/or in the context of another application benefitting from it reusability, flexibility, and high-scalability. Some example applications and an introduction to the data intensive infrastructure architecture will be presented to provide an overview of the diverse scope of Meandre usages. Finally, a case will be presented showing how software developers and system designers can easily transition to these new paradigms to address the primary data-deluge challenges and to soar to new heights with extreme application scalability using cloud computing concepts. ...

After quite a bit of experimenting with different alternatives, Meandre is moving into Scala. Scala is a general purpose programming language designed to express common programming patterns in a concise, elegant, and type-safe way. This is not a radical process, but a gradual one while I am starting to revisit the infrastructure for the next major release. Scala also generates code for the JVM making mix and match trivial. I started fuzzing around with Scala back when I started the development of Meandre during the summer of 2007, however I did fall back to Java since that was what most of the people in the group was comfortable with. I was fascinated with Scala fusion of object oriented programming and functional programming. Time went by and the codebase has grown to a point that I cannot stand anymore cutting through the weeds of Java when I have to extend the infrastructure or do bug fixing—not to mention its verbosity even for writing trivial code. This summer I decided to go on a quest to get me out of the woods. I do not mind relying on the JVM and the large collection of libraries available, but I would also like to get my sanity back. Yes, I tested some of the usual suspects for the JVM (Jython, JRuby, Clojure, and Groovy) but not quite what I wanted. For instance, I wrote most of the Meandre infrastructure services using Jython (much more concise than Java), but still not quite happy to jump on that boat. Clojure is also interesting (functional programming) but it would be hard to justify for the group to move into it since not everybody may feel comfortable with a pure functional language. I also toyed with some not-so-usual ones like Erlang and Haskell, but again, I ended up with no real argument that could justify such a decision. So, as I started doing back in 2007, I went back to my original idea of using Scala and its mixed object-oriented- and functional-programming- paradigm. To test it seriously, I started developing the distributed execution engine for Meandre in Scala using its Earlang-inspired actors. And, boom, suddenly I found myself spending more time thinking that writing/debugging threaded/networking code :D. Yes, I regret my 2007 decision instead of running with my original intuition, but better late than never. With a working seed of the distributed engine working and tested (did I mention that scalacheck and specs are really powerful tools for behavior driven development?), I finally decided to start gravitating the Meandre infrastructure development effort from Java to Scala-–did I mention that Scala is Martin Odersky’s child? Yes, such a decision has some impact on my colleagues, but I envision that the benefits will eventually weight out the initial resistance and step learning curve. At least, the last two group meetings nobody jumped off the window while presenting the key elements of Scala, and demonstrating how concise and elegant it made the first working seed of the distributed execution engine :D. We even got in discussions about the benefits of using Scala if it delivered everything I showed. I am lucky to work with such smart guys. If you want to take a peek at the distributed execution engine (a.k.a. Snowfield) at SEASR’s Fisheye. Oh, one last thing. Are you using Atlassian’s Fisheye? Do you want syntax highlighting for Scala? I tweaked the Java definitions to make it highlight Scala code. Remember to drop the scala.def file on $FISHEYE_HOME/syntax directory add an entry on the filename.map to make it highlight anything with extension .scala. ...